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IDOL_mixed_cells
- IDOL mixed blood cell DNA methylation
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Middleton_pd
- Middleton et al. Saliva reference pheno data
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combData()
- Combine reference and user's sample data sets together
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getRef()
- Extract the correct reference data set
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identClust()
- Calculate the stability of selected features with pvClust
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idol.a_450
- IDOL probes for 450k array - adult blood
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idol.a_EPIC
- IDOL probes for EPIC array - adult blood
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idol.a_ext
- IDOL probes for EPIC array - extended 12 cell type reference
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idol.c
- IDOL probes for 450k array - cord blood
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pickCompProbesCaret()
- Pick features for cell type prediction with caret by repeated cross validation
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pickCompProbesCaretLOOCV()
- Pick features for cell type prediction with caret by LOOCV
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pickProbes()
- Pick features for cell type prediction
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predictCT()
- Estimate cell type proportion based on sample DNAm data and coefficients obtained from the reference data
